Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
718
ChIP-seq
Assay category
718
DNA binding
Target of assay
719
histone modification
718
histone
474
transcription factor
373
narrow histone mark
344
broad histone mark
308
control
93
RNA binding protein
88
recombinant protein
22
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
175
October, 2019
155
August, 2017
89
May, 2019
74
November, 2017
60
April, 2019
29
October, 2018
27
May, 2020
24
December, 2017
22
May, 2021
17
August, 2021
14
February, 2018
12
October, 2017
10
November, 2019
7
January, 2019
3
March, 2020
Available data
577
bigWig
575
bed narrowPeak
555
bam
329
bigBed narrowPeak
212
tagAlign
130
fastq
38
bed broadPeak
16
bed bed3+
3
bigBed broadPeak
1
tagAlign bed3+
Organism
712
Homo sapiens
Biosample type
586
tissue
primary cell
105
in vitro differentiated cells
27
cell line
Organ
184
brain
88
pancreas
87
liver
70
connective tissue
60
heart
54
blood vessel
54
vasculature
49
limb
32
adipose tissue
26
epithelium
25
musculature of body
24
nerve
20
artery
20
kidney
10
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
714
AMP
4
T1D
Genome assembly (visualization)
546
GRCh38
527
hg19
Lab
695
AMP-T2D consortium
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
718 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
63
islet of Langerhans
51
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
tibial nerve
24
+ See 99 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
9
+ See 7 more…
cell line
EndoC_BH1
12
HepG2
7
Panc1
7
GM12878
1
See all biosamples
Download