Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
394
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
322
transcription factor
81
recombinant protein
62
control
57
RNA binding protein
19
chromatin remodeller
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
other context
2
other post-translational modification
Date released
294
November, 2017
56
November, 2018
28
December, 2018
23
January, 2019
Available data
556
bam
496
bigWig
401
fastq
380
bed narrowPeak
331
bigBed narrowPeak
119
tsv
46
bed broadPeak
46
bigBed broadPeak
9
tagAlign
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
401
Homo sapiens
Biosample type
404
primary cell
401
cell line
334
tissue
113
in vitro differentiated cells
1
stem cell
Organ
341
liver
60
blood
60
bodily fluid
Project
401
AMP
Genome assembly (visualization)
341
hg19
299
GRCh38
Lab
401
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
401 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
334
5
1
1
GM12878
60
Download