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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
Assay category
59
DNA binding
Target of assay
346
transcription factor
88
recombinant protein
83
control
59
RNA binding protein
27
histone
27
histone modification
19
chromatin remodeller
14
narrow histone mark
13
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
29
November, 2017
20
November, 2018
6
January, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
58
bam
57
bed narrowPeak
57
bigWig
57
fastq
55
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
tar
Organism
59
Homo sapiens
Biosample type
59
cell line
23
tissue
11
in vitro differentiated cells
10
primary cell
Organ
48
liver
10
blood
10
bodily fluid
1
epithelium
1
pancreas
Project
59
AMP
Genome assembly (visualization)
56
hg19
53
GRCh38
Lab
58
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
inconsistent control read length
3
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
cell line
HepG2
48
GM12878
10
EndoC_BH1
1
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