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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
181
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
62
August, 2017
53
May, 2021
35
August, 2021
34
December, 2017
22
February, 2018
16
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
274
bam
242
bigWig
tsv
124
fastq
115
bed narrowPeak
40
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
246
Homo sapiens
Biosample type
1655
tissue
813
primary cell
517
cell line
246
in vitro differentiated cells
4
stem cell
Organ
86
connective tissue
21
epithelium
20
embryo
15
liver
3
pancreas
1
adipose tissue
Project
246
AMP
Genome assembly (visualization)
153
hg19
121
GRCh38
4
hg18
Lab
192
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
24
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
61
8
1
1
1
embryonic stem cell
40
6
5
neural progenitor cell
21
10
pancreatic endoderm
16
1
hepatocyte
15
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