Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
171
DNA binding
89
Transcription
14
DNA methylation
5
DNA accessibility
Target of assay
119
histone modification
118
histone
70
broad histone mark
48
narrow histone mark
29
control
23
transcription factor
2
RNA binding protein
Date released
545
February, 2021
279
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
73
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
173
bigWig
170
fastq
165
bam
89
tsv
61
bed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
17
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
272
Homo sapiens
Biosample type
279
tissue
62
in vitro differentiated cells
54
primary cell
Organ
143
pancreas
57
adipose tissue
57
connective tissue
53
liver
26
musculature of body
Project
279
AMP
Genome assembly (visualization)
175
hg19
153
GRCh38
Lab
279
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
279 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
47
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
+ See 4 more…
See all biosamples
Download