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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
154
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
154
DNA binding
25
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
69
histone modification
68
histone
46
control
43
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
52
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
287
bam
264
bigWig
154
tsv
112
bed narrowPeak
81
fastq
70
tagAlign
48
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bedpe bed3+
1
csv
1
hic
Organism
359
Homo sapiens
Biosample type
375
cell line
359
tissue
15
in vitro differentiated cells
13
primary cell
Organ
547
connective tissue
498
pancreas
488
adipose tissue
359
liver
312
heart
298
kidney
264
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
78
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
359
AMP
Genome assembly (visualization)
266
hg19
237
GRCh38
Lab
319
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
assay_title!
RRBS
BIOSAMPLE
ASSAY
359 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
144
20
2
3
1
1
1
1
right lobe of liver
3
10
1
2
1
2
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