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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
135
DNA binding
89
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
93
histone modification
92
histone
46
broad histone mark
45
narrow histone mark
40
transcription factor
7
RNA binding protein
2
control
1
chromatin remodeller
Date released
568
February, 2021
276
May, 2021
263
November, 2017
233
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
74
November, 2018
72
September, 2018
66
December, 2017
64
April, 2019
57
November, 2019
49
April, 2018
46
October, 2018
40
May, 2024
35
February, 2023
30
December, 2018
29
February, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
233
bam
233
fastq
231
bigWig
102
bed narrowPeak
89
tsv
32
bigBed narrowPeak
29
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
227
Homo sapiens
Biosample type
153
tissue
43
in vitro differentiated cells
37
primary cell
Organ
144
pancreas
59
connective tissue
18
liver
16
adipose tissue
13
epithelium
Project
233
AMP
Genome assembly (visualization)
260
hg19
233
GRCh38
Lab
233
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
csv
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
89
1
liver
17
white adipose tissue
12
pancreas
8
adipose tissue
1
2
+ See 2 more…
in vitro differentiated cells
adipocyte
42
1
primary cell
pancreatic endocrine cell
12
skeletal muscle myoblast
12
pancreatic alpha cell
5
1
pancreatic beta cell
5
1
pancreatic acinar cell
1
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