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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
2
ATAC-seq
Assay category
6
DNA binding
2
DNA accessibility
Target of assay
4
transcription factor
2
broad histone mark
2
histone
2
histone modification
Date released
4
November, 2017
2
October, 2019
1
March, 2019
1
October, 2017
Available data
3336
bam
3073
bigWig
bed narrowPeak
1600
tsv
1302
fastq
1011
bigBed narrowPeak
387
tagAlign
309
bed broadPeak
272
bigBed broadPeak
263
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
4
cell line
2
primary cell
2
tissue
Organ
4
liver
2
blood vessel
2
epithelium
2
pancreas
2
vasculature
2
vein
Project
8
AMP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
8 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
4
primary cell
endothelial cell of umbilical vein
2
tissue
islet of Langerhans
2
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