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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
Assay category
3
3D chromatin structure
Date released
1
August, 2021
1
November, 2019
1
October, 2019
Available data
556
bam
496
bigWig
401
fastq
380
bed narrowPeak
331
bigBed narrowPeak
119
tsv
46
bed broadPeak
46
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
3
Homo sapiens
Biosample type
10
tissue
8
primary cell
7
in vitro differentiated cells
3
cell line
Organ
2
pancreas
1
epithelium
1
liver
Project
3
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
3 results
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Hi-C
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
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