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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
1
pCHi-C
1
whole genome sequencing assay
Assay category
10
3D chromatin structure
1
DNA sequencing
Date released
March, 2020
3
August, 2021
3
October, 2019
3
October, 2022
2
November, 2019
1
August, 2018
Available data
3320
bam
3093
bigWig
1760
bed narrowPeak
1555
tsv
1302
fastq
1011
bigBed narrowPeak
387
tagAlign
309
bed broadPeak
272
bigBed broadPeak
263
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
13
hic
12
bed bed3
11
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
3
cell line
3
in vitro differentiated cells
3
primary cell
3
tissue
Organ
6
pancreas
4
epithelium
2
liver
1
adipose tissue
1
connective tissue
1
heart
Project
9
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
6
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
March, 2020
BIOSAMPLE
ASSAY
12 results
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Hi-C
pCHi-C
whole genome sequencing assay
cell line
HepG2
1
1
EndoC_BH1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
heart
1
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