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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
2
DNase-seq
Assay category
66
DNA binding
2
DNA accessibility
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
51
November, 2017
15
August, 2017
2
October, 2019
Available data
3336
bam
3073
bigWig
1723
bed narrowPeak
1600
tsv
1302
fastq
1011
bigBed narrowPeak
387
tagAlign
309
bed broadPeak
272
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
68
Homo sapiens
Biosample type
45
cell line
22
primary cell
1
in vitro differentiated cells
Organ
45
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
connective tissue
Project
68
AMP
Genome assembly (visualization)
68
hg19
52
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
DNase-seq
cell line
HepG2
45
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
in vitro differentiated cells
adipocyte
1
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