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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
66
ChIP-seq
Assay category
199
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
51
November, 2017
15
August, 2017
8
October, 2019
7
November, 2018
1
November, 2020
Available data
2656
bam
2459
bigWig
1518
bed narrowPeak
1183
tsv
925
bigBed narrowPeak
840
fastq
368
tagAlign
288
bed broadPeak
265
bigBed broadPeak
234
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
265
Homo sapiens
Biosample type
170
tissue
49
primary cell
45
cell line
1
in vitro differentiated cells
Organ
78
kidney
50
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
265
AMP
Genome assembly (visualization)
249
GRCh38
244
hg19
Lab
265
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
265 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
cell line
HepG2
45
in vitro differentiated cells
adipocyte
1
See all biosamples
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