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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
327
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
327
DNA binding
6
DNA accessibility
Target of assay
299
transcription factor
80
recombinant protein
49
RNA binding protein
25
histone
25
histone modification
16
broad histone mark
12
chromatin remodeller
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
230
November, 2017
50
December, 2017
46
November, 2018
5
August, 2017
2
June, 2019
Available data
654
bam
595
bigWig
438
fastq
416
bed narrowPeak
333
bigBed narrowPeak
174
tsv
75
tagAlign
50
bed broadPeak
50
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
333
Homo sapiens
Biosample type
269
cell line
48
tissue
14
in vitro differentiated cells
2
primary cell
Organ
333
liver
127
brain
104
kidney
94
heart
86
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
333
AMP
Genome assembly (visualization)
329
hg19
303
GRCh38
Lab
333
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
333 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
269
tissue
liver
37
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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