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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
155
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
113
histone modification
112
histone
58
broad histone mark
53
narrow histone mark
41
transcription factor
8
RNA binding protein
1
chromatin remodeller
1
control
Date released
551
February, 2021
313
November, 2017
303
May, 2021
260
May, 2020
256
August, 2017
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
75
November, 2018
72
September, 2018
65
April, 2019
61
December, 2017
49
April, 2018
47
August, 2021
46
October, 2018
31
November, 2019
30
December, 2018
29
February, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
271
fastq
266
bam
256
bigWig
126
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
36
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
250
Homo sapiens
Biosample type
173
tissue
42
in vitro differentiated cells
41
primary cell
Organ
151
pancreas
59
connective tissue
17
adipose tissue
17
liver
13
epithelium
13
musculature of body
Project
256
AMP
Genome assembly (visualization)
254
hg19
231
GRCh38
Lab
256
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
256 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
16
skeletal muscle tissue
13
white adipose tissue
12
pancreas
8
+ See 4 more…
in vitro differentiated cells
adipocyte
41
1
primary cell
skeletal muscle myoblast
14
2
pancreatic endocrine cell
12
pancreatic alpha cell
5
1
pancreatic beta cell
5
1
pancreatic acinar cell
1
See all biosamples
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