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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
6
single cell RNA-seq
Assay category
7
DNA accessibility
6
Transcription
Date released
10
February, 2021
3
February, 2023
Available data
2732
bam
2505
bigWig
1473
bed narrowPeak
1330
tsv
903
bigBed narrowPeak
898
fastq
287
tagAlign
260
bed broadPeak
226
bed bed3+
223
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
7
in vitro differentiated cells
6
tissue
primary cell
Organ
5
kidney
4
connective tissue
1
liver
Project
13
AMP
Genome assembly (visualization)
7
hg19
Lab
10
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
5
audit script error
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
13 results
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ATAC-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
kidney
5
liver
1
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