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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
Assay category
124
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
64
August, 2021
19
September, 2020
Available data
3336
bam
3113
bigWig
1763
bed narrowPeak
1600
tsv
1302
fastq
1011
bigBed narrowPeak
387
tagAlign
309
bed broadPeak
272
bigBed broadPeak
263
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
217
Homo sapiens
Biosample type
153
primary cell
64
tissue
Organ
80
epithelium
80
pancreas
64
kidney
Project
153
HPAP
64
AMP
Genome assembly (visualization)
64
GRCh38
Lab
153
Klaus Kaestner, Upenn
64
Katalin Susztak, Upenn
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
217 results
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ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
kidney
64
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