Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
60
DNA accessibility
52
Transcription
Date released
93
May, 2022
19
September, 2020
Available data
3318
bam
3056
bigWig
1723
bed narrowPeak
1594
tsv
1285
fastq
1011
bigBed narrowPeak
387
tagAlign
309
bed broadPeak
272
bigBed broadPeak
263
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
112
Homo sapiens
Biosample type
112
primary cell
Organ
39
epithelium
39
pancreas
Project
112
HPAP
Lab
112
Klaus Kaestner, Upenn
audit.WARNING.category!
inconsistent control read length
assay_title!
WGBS
BIOSAMPLE
ASSAY
112 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
Download