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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
117
ChIP-seq
85
single cell RNA-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
275
Transcription
117
DNA binding
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
76
February, 2023
74
May, 2022
56
September, 2020
45
May, 2020
18
February, 2021
3
October, 2022
1
March, 2023
Available data
215
bigWig
180
bam
132
fastq
114
bed narrowPeak
102
tsv
93
zippedFastqFolder
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
459
Homo sapiens
Biosample type
459
primary cell
197
tissue
47
cell line
44
in vitro differentiated cells
2
stem cell
Organ
103
epithelium
103
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
227
HPAP
196
T1D
35
AMP
1
ITG
Genome assembly (visualization)
218
hg19
181
GRCh38
Lab
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
5
inconsistent ontology term
3
audit script error
audit.WARNING.category!
inconsistent control read length
lab.title!
AMP-T2D consortium
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
459 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
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