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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
76
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
76
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
111
May, 2021
28
August, 2021
26
February, 2021
25
August, 2017
23
February, 2018
16
February, 2023
15
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
January, 2018
2
December, 2019
1
August, 2018
Available data
202
bam
167
bigWig
131
tsv
62
fastq
44
bed narrowPeak
14
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
268
Homo sapiens
Biosample type
2148
tissue
851
primary cell
608
cell line
268
in vitro differentiated cells
7
stem cell
Organ
54
connective tissue
15
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
268
AMP
Genome assembly (visualization)
210
hg19
177
GRCh38
Lab
234
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
month_released!
January, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
268 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
24
8
1
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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