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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
single cell RNA-seq
22
ChIP-seq
17
total RNA-seq
Assay category
65
Transcription
22
DNA binding
Target of assay
14
histone
14
histone modification
8
control
7
broad histone mark
7
narrow histone mark
Date released
303
November, 2017
271
August, 2017
83
December, 2017
83
November, 2018
76
February, 2023
73
September, 2018
59
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
37
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
201
bam
193
bigWig
179
tsv
87
fastq
14
bed narrowPeak
Organism
87
Homo sapiens
Biosample type
48
primary cell
37
in vitro differentiated cells
2
tissue
Organ
39
pancreas
33
epithelium
13
embryo
2
connective tissue
Project
87
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
87
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
87 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 10 more…
in vitro differentiated cells
pancreatic endoderm
9
4
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
primitive gut cell
3
2
+ See 2 more…
tissue
islet of Langerhans
2
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