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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
15
total RNA-seq
4
ATAC-seq
1
Hi-C
Assay category
22
DNA binding
15
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
control
7
broad histone mark
7
narrow histone mark
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
38
bam
38
fastq
29
bigWig
15
tsv
14
bed narrowPeak
1
bed broadPeak
1
bedpe
1
hic
Organism
42
Homo sapiens
Biosample type
37
in vitro differentiated cells
5
tissue
Organ
13
embryo
5
pancreas
Project
42
AMP
Genome assembly (visualization)
32
hg19
31
GRCh38
Lab
37
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
9
4
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
primitive gut cell
3
2
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tissue
islet of Langerhans
4
1
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