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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
50
ChIP-seq
40
single cell RNA-seq
18
total RNA-seq
Assay category
103
DNA accessibility
58
Transcription
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
385
November, 2017
306
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
83
December, 2017
83
November, 2018
80
April, 2019
73
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
23
October, 2017
22
February, 2018
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
283
bam
263
bigWig
tsv
50
tagAlign
41
fastq
27
bed narrowPeak
19
zippedFastqFolder
Organism
211
Homo sapiens
Biosample type
161
primary cell
50
tissue
Organ
50
liver
19
epithelium
19
pancreas
Project
152
AMP
59
HPAP
Genome assembly (visualization)
72
hg19
22
GRCh38
Lab
152
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
211 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
2
15
macrophage
11
+ See 27 more…
tissue
liver
50
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