Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
148
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
97
transcription factor
27
control
24
RNA binding protein
24
histone
24
histone modification
16
recombinant protein
14
narrow histone mark
10
broad histone mark
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
166
fastq
165
bam
136
bigWig
129
bed narrowPeak
118
bigBed narrowPeak
18
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
166
Homo sapiens
Biosample type
74
tissue
56
cell line
34
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
111
liver
18
epithelium
15
blood
15
bodily fluid
10
embryo
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
166
AMP
Genome assembly (visualization)
140
GRCh38
132
hg19
Lab
166
AMP-T2D consortium
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
166 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
liver
42
2
right lobe of liver
10
1
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
cell line
HepG2
40
1
GM12878
15
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
7
Hepatic endoderm
3
Posterior foregut
3
definitive endodermal cell
3
+ See 1 more…
primary cell
pancreatic cell
1
stem cell
hESC
1
See all biosamples
Download