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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
26
ATAC-seq
22
total RNA-seq
2
Hi-C
Assay category
86
DNA binding
26
DNA accessibility
22
Transcription
2
3D chromatin structure
Target of assay
39
histone
39
histone modification
31
control
25
broad histone mark
16
transcription factor
14
narrow histone mark
12
RNA binding protein
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
bam
81
bed narrowPeak
77
bigWig
59
fastq
44
bigBed narrowPeak
22
tsv
2
bedpe bed3+
2
hic
Organism
136
Homo sapiens
Biosample type
113
tissue
16
cell line
5
in vitro differentiated cells
2
primary cell
Organ
107
pancreas
24
adipose tissue
24
connective tissue
18
epithelium
Project
136
AMP
Genome assembly (visualization)
105
hg19
103
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
136 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
body of pancreas
32
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
+ See 2 more…
cell line
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
2
See all biosamples
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