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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
85
ChIP-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
85
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
42
April, 2019
31
June, 2019
25
May, 2024
22
July, 2019
12
May, 2019
7
March, 2020
6
October, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
122
bigWig
113
bam
113
tsv
100
bed narrowPeak
69
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
243
Homo sapiens
Biosample type
233
tissue
9
primary cell
1
in vitro differentiated cells
Organ
870
pancreas
710
liver
645
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
27
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
243
AMP
Genome assembly (visualization)
122
GRCh38
93
hg19
Lab
218
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
organ_slims!
blood vessel
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
243 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
26
3
3
4
2
1
1
1
left cardiac atrium
18
25
1
heart
1
10
18
4
1
1
1
heart right ventricle
17
9
1
1
2
1
1
right cardiac atrium
18
4
1
1
+ See 9 more…
primary cell
cardiac fibroblast
3
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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