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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
66
ChIP-seq
Assay category
197
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
51
November, 2017
14
August, 2017
9
October, 2019
8
November, 2018
Available data
2749
bam
2509
bigWig
1654
bed narrowPeak
1207
fastq
1122
tsv
983
bigBed narrowPeak
365
tagAlign
299
bed broadPeak
263
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
263
Homo sapiens
Biosample type
174
tissue
46
cell line
43
primary cell
Organ
78
kidney
50
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
263
AMP
Genome assembly (visualization)
247
GRCh38
241
hg19
Lab
263
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
263 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
45
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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