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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
258
DNA binding
89
Transcription
15
DNA methylation
8
DNA accessibility
Target of assay
179
histone modification
178
histone
100
broad histone mark
77
narrow histone mark
41
transcription factor
38
control
8
RNA binding protein
1
chromatin remodeller
Date released
683
February, 2021
379
November, 2017
373
May, 2021
370
August, 2017
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
83
November, 2018
80
April, 2019
73
October, 2018
65
December, 2017
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
246
fastq
243
bigWig
241
bam
113
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
33
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
363
Homo sapiens
Biosample type
279
tissue
62
in vitro differentiated cells
29
primary cell
Organ
180
pancreas
119
connective tissue
57
adipose tissue
53
liver
26
musculature of body
epithelium
Project
370
AMP
Genome assembly (visualization)
247
hg19
220
GRCh38
Lab
370
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
epithelium
month_released!
February, 2023
BIOSAMPLE
ASSAY
370 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
47
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
61
1
primary cell
skeletal muscle myoblast
14
1
2
pancreatic endocrine cell
12
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