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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
181
DNA binding
138
Transcription
43
DNA accessibility
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
42
August, 2021
37
February, 2018
34
December, 2017
26
February, 2021
16
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
274
bam
242
bigWig
131
tsv
124
fastq
115
bed narrowPeak
40
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
373
Homo sapiens
Biosample type
2679
tissue
1059
primary cell
632
cell line
373
in vitro differentiated cells
8
stem cell
Organ
91
connective tissue
26
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
373
AMP
Genome assembly (visualization)
276
hg19
248
GRCh38
4
hg18
Lab
319
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
organ_slims!
musculature of body
assay_title!
Hi-C
BIOSAMPLE
ASSAY
373 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
16
4
1
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