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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
48
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
279
DNA accessibility
264
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
224
histone
224
histone modification
118
broad histone mark
106
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
54
August, 2017
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
28
July, 2019
9
November, 2017
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
597
bigWig
591
bam
404
fastq
281
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1061
Homo sapiens
Biosample type
2681
tissue
1061
primary cell
636
cell line
377
in vitro differentiated cells
8
stem cell
Organ
402
epithelium
342
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
540
AMP
324
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
611
hg19
520
GRCh38
Lab
505
AMP-T2D consortium
324
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
musculature of body
month_released!
January, 2021
BIOSAMPLE
ASSAY
1061 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
11
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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