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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
RRBS
1
FAIRE-seq
Assay category
144
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
100
histone modification
99
histone
50
broad histone mark
48
narrow histone mark
41
transcription factor
8
RNA binding protein
3
control
1
chromatin remodeller
Date released
574
February, 2021
316
May, 2021
260
May, 2020
260
November, 2017
245
August, 2017
217
October, 2019
164
July, 2018
146
June, 2019
91
May, 2019
86
July, 2019
72
September, 2018
66
December, 2017
66
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
46
October, 2018
45
February, 2023
38
May, 2022
30
December, 2018
29
February, 2018
28
March, 2020
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
March, 2019
3
October, 2022
2
January, 2018
1
May, 2023
Available data
241
bigWig
237
fastq
236
bam
113
bed narrowPeak
89
tsv
36
bigBed narrowPeak
29
bed bed3+
28
bed broadPeak
25
tagAlign
15
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
239
Homo sapiens
Biosample type
160
tissue
43
in vitro differentiated cells
42
primary cell
Organ
151
pancreas
58
connective tissue
19
liver
15
adipose tissue
musculature of body
13
epithelium
Project
245
AMP
Genome assembly (visualization)
245
hg19
233
GRCh38
Lab
245
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
245 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
1
white adipose tissue
12
pancreas
8
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
42
1
primary cell
skeletal muscle myoblast
14
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
5
1
pancreatic beta cell
5
1
pancreatic acinar cell
1
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