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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
101
ChIP-seq
2
ATAC-seq
Assay category
101
DNA binding
Target of assay
54
histone
54
histone modification
47
transcription factor
30
broad histone mark
24
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
57
November, 2017
39
August, 2017
3
October, 2017
2
October, 2019
Available data
1502
bam
1322
bigWig
1259
bed narrowPeak
781
fastq
758
bigBed narrowPeak
387
tagAlign
101
bed broadPeak
66
bigBed broadPeak
43
bed bed3+
3
tar
1
tagAlign bed3+
Organism
95
Homo sapiens
Biosample type
45
cell line
35
tissue
21
primary cell
Organ
45
liver
15
brain
13
musculature of body
12
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
101
AMP
Genome assembly (visualization)
101
hg19
65
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
organ_slims!
spleen
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
cell line
HepG2
45
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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