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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
Assay category
23
DNA binding
Target of assay
986
histone modification
985
histone
498
narrow histone mark
489
transcription factor
486
broad histone mark
343
control
108
RNA binding protein
88
recombinant protein
23
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
9
November, 2017
6
January, 2019
3
December, 2017
2
December, 2018
2
November, 2018
1
August, 2017
Available data
23
bam
23
bed narrowPeak
23
bigBed narrowPeak
23
bigWig
23
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
23
Homo sapiens
Biosample type
19
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
12
liver
10
blood
10
bodily fluid
1
epithelium
Project
23
AMP
Genome assembly (visualization)
23
hg19
22
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
ureter
files.file_type!
txt
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
cell line
GM12878
10
HepG2
9
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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