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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
19
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
54
DNA binding
19
Transcription
3
DNA accessibility
Target of assay
34
histone
34
histone modification
19
broad histone mark
18
control
15
narrow histone mark
2
transcription factor
Date released
42
October, 2019
13
February, 2018
10
December, 2017
8
August, 2021
3
May, 2021
1
February, 2020
1
January, 2018
Available data
75
bam
57
bigWig
38
bed narrowPeak
26
bigBed narrowPeak
24
fastq
19
tsv
4
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
78
Homo sapiens
Biosample type
43
tissue
26
in vitro differentiated cells
8
cell line
1
primary cell
Organ
937
pancreas
764
liver
678
connective tissue
519
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
1
T1D
Genome assembly (visualization)
57
GRCh38
57
hg19
1
hg18
Lab
77
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
pCHi-C
tissue
tibial nerve
35
5
2
1
in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
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