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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
124
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
124
DNA binding
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
24
October, 2019
22
August, 2017
21
September, 2018
18
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
124
bam
96
bigWig
92
bed narrowPeak
67
fastq
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
124
Homo sapiens
Biosample type
88
primary cell
21
in vitro differentiated cells
15
cell line
Organ
525
liver
218
brain
209
pancreas
147
connective tissue
124
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
20
spleen
19
embryo
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
122
AMP
2
T1D
Genome assembly (visualization)
96
hg19
92
GRCh38
Lab
124
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic ductal cell
13
pancreatic alpha cell
11
pancreatic beta cell
11
epithelial cell of proximal tubule
10
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
3
pancreatic PP cell
3
cell line
EndoC_BH1
15
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