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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
total RNA-seq
Assay category
44
DNA accessibility
42
DNA binding
4
Transcription
Target of assay
42
histone
42
histone modification
30
broad histone mark
12
narrow histone mark
Date released
52
October, 2019
32
June, 2019
6
February, 2021
May, 2019
Available data
90
bam
86
bed narrowPeak
84
bigWig
78
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
Organism
90
Homo sapiens
Biosample type
90
tissue
Organ
648
pancreas
598
liver
583
connective tissue
426
adipose tissue
302
epithelium
173
heart
139
brain
126
vasculature
125
kidney
120
blood vessel
90
artery
90
limb
70
bone element
67
musculature of body
55
blood
55
bodily fluid
34
eye
31
nerve
26
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
90
AMP
Genome assembly (visualization)
91
GRCh38
90
hg19
Lab
90
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
May, 2019
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
tissue
tibial nerve
24
2
1
4
tibial artery
18
2
1
muscle of arm
17
muscle of leg
13
distal epiphysis of femur
1
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