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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
DNase-seq
21
total RNA-seq
8
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
Assay category
85
DNA binding
21
Transcription
8
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
59
histone
59
histone modification
37
broad histone mark
24
control
22
narrow histone mark
2
transcription factor
Date released
65
October, 2019
13
February, 2018
10
December, 2017
8
August, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
May, 2021
1
January, 2018
Available data
111
bam
81
bigWig
67
bed narrowPeak
48
bigBed narrowPeak
24
fastq
21
tsv
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
120
Homo sapiens
Biosample type
86
tissue
26
in vitro differentiated cells
8
cell line
Organ
929
pancreas
758
liver
669
connective tissue
500
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
86
GRCh38
86
hg19
1
hg18
Lab
120
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
tissue
tibial nerve
35
5
1
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 6 more…
in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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