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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
36
DNase-seq
21
total RNA-seq
8
ATAC-seq
4
Hi-C
1
GRO-seq
Assay category
85
DNA binding
44
DNA accessibility
21
Transcription
4
3D chromatin structure
Target of assay
59
histone
59
histone modification
37
broad histone mark
24
control
22
narrow histone mark
2
transcription factor
Date released
69
October, 2019
32
June, 2019
13
February, 2018
10
December, 2017
8
August, 2021
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
2
May, 2021
1
January, 2018
Available data
147
bam
117
bigWig
103
bed narrowPeak
84
bigBed narrowPeak
38
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
24
fastq
21
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
155
Homo sapiens
Biosample type
121
tissue
26
in vitro differentiated cells
8
cell line
Organ
931
pancreas
761
liver
675
connective tissue
513
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
34
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
155
AMP
Genome assembly (visualization)
122
hg19
121
GRCh38
1
hg18
Lab
155
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
See all biosamples
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