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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
36
DNase-seq
21
total RNA-seq
8
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
1
pCHi-C
Assay category
85
DNA binding
44
DNA accessibility
21
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
59
histone
59
histone modification
37
broad histone mark
24
control
22
narrow histone mark
2
transcription factor
Date released
69
October, 2019
32
June, 2019
13
February, 2018
10
December, 2017
8
August, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
May, 2021
1
January, 2018
1
March, 2020
Available data
147
bam
117
bigWig
103
bed narrowPeak
84
bigBed narrowPeak
38
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
24
fastq
22
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
157
Homo sapiens
Biosample type
123
tissue
26
in vitro differentiated cells
8
cell line
Organ
937
pancreas
764
liver
678
connective tissue
519
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
122
GRCh38
122
hg19
1
hg18
Lab
157
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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