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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
DNase-seq
93
ChIP-seq
83
ATAC-seq
64
single cell RNA-seq
57
total RNA-seq
6
snATAC-seq
5
Hi-C
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
RRBS
1
WGBS
1
small RNA-seq
Assay category
194
DNA accessibility
122
Transcription
93
DNA binding
5
3D chromatin structure
2
DNA methylation
Target of assay
69
histone
69
histone modification
44
broad histone mark
25
narrow histone mark
23
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
100
June, 2019
73
October, 2019
47
September, 2023
23
April, 2019
14
February, 2021
14
May, 2023
9
July, 2019
7
May, 2019
3
December, 2019
3
February, 2020
Available data
245
bed narrowPeak
212
bam
182
bigWig
171
bigBed narrowPeak
104
bed bed3+
104
bed broadPeak
104
bigBed broadPeak
64
xls
62
txt
19
tsv
5
csv
2
bed bedMethyl
2
bigBed bedMethyl
1
hic
Organism
421
Homo sapiens
Biosample type
421
tissue
36
primary cell
19
cell line
Organ
547
connective tissue
500
pancreas
488
adipose tissue
360
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
374
AMP
47
KPMP
Genome assembly (visualization)
261
GRCh38
188
hg19
Lab
232
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
audit script error
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
421 results
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DNase-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
snDrop-seq
RNA microarray
FAIRE-seq
RRBS
WGBS
small RNA-seq
tissue
kidney
13
27
75
64
49
6
1
1
1
tibial nerve
2
35
1
5
tibial artery
2
23
1
1
muscle of leg
13
7
1
muscle of arm
17
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