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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
47
DNA accessibility
15
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
69
October, 2019
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
131
bam
120
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
173
Homo sapiens
Biosample type
159
tissue
14
primary cell
Organ
937
pancreas
764
liver
678
connective tissue
519
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
173
AMP
Genome assembly (visualization)
131
hg19
111
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
+ See 12 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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