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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
10
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
46
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
8
February, 2021
February, 2023
7
May, 2019
5
July, 2019
3
February, 2020
Available data
116
bam
94
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
124
Homo sapiens
Biosample type
124
tissue
Organ
881
pancreas
764
liver
664
connective tissue
490
adipose tissue
467
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
34
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
124
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2023
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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