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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
Assay category
52
DNA binding
Target of assay
323
transcription factor
108
control
91
histone modification
90
histone
81
recombinant protein
54
narrow histone mark
52
RNA binding protein
36
broad histone mark
12
chromatin remodeller
2
other context
2
other post-translational modification
Date released
29
November, 2017
18
November, 2018
4
December, 2017
1
August, 2021
Available data
51
bam
51
fastq
50
bed narrowPeak
50
bigWig
49
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
tar
Organism
52
Homo sapiens
Biosample type
48
cell line
2
in vitro differentiated cells
2
tissue
Organ
52
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
52
AMP
Genome assembly (visualization)
49
hg19
46
GRCh38
Lab
51
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
inconsistent control read length
3
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
cell line
HepG2
48
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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