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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
total RNA-seq
74
single cell RNA-seq
2
small RNA-seq
Assay category
453
Transcription
209
DNA binding
173
DNA accessibility
47
DNA methylation
9
3D chromatin structure
Date released
157
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
39
April, 2018
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
386
bam
382
tsv
380
bigWig
253
fastq
6
txt
Organism
453
Homo sapiens
Biosample type
291
tissue
155
primary cell
7
cell line
Organ
453
pancreas
192
liver
175
epithelium
120
kidney
114
heart
32
connective tissue
24
brain
19
eye
15
adipose tissue
15
blood vessel
15
vasculature
14
embryo
9
lung
9
musculature of body
7
limb
6
artery
5
nerve
4
bone element
4
skeleton
1
pericardium
1
spinal cord
Project
391
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
380
GRCh38
380
hg19
Lab
387
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2021
BIOSAMPLE
ASSAY
453 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
2
pancreas
2
primary cell
pancreatic alpha cell
52
12
pancreatic beta cell
21
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 4 more…
cell line
EndoC_BH1
7
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