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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
132
ChIP-seq
63
ATAC-seq
11
snATAC-seq
8
DNase-seq
6
WGBS
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
Assay category
291
Transcription
132
DNA binding
84
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
74
histone
74
histone modification
42
broad histone mark
37
control
32
narrow histone mark
23
transcription factor
8
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
143
August, 2017
120
July, 2018
50
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
16
November, 2018
10
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
July, 2019
6
October, 2017
6
September, 2017
5
March, 2019
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
448
bam
384
bigWig
276
tsv
232
fastq
132
bed narrowPeak
70
bigBed narrowPeak
28
bed bed3+
21
bed broadPeak
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
7
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
518
Homo sapiens
Biosample type
525
tissue
342
primary cell
92
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
500
pancreas
488
adipose tissue
360
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
495
AMP
30
T1D
Genome assembly (visualization)
422
hg19
397
GRCh38
Lab
462
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
525 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
tissue
islet of Langerhans
284
50
58
7
1
3
4
1
1
body of pancreas
3
34
4
4
2
2
pancreas
2
12
4
2
2
1
1
1
1
spleen
20
1
1
2
1
endocrine pancreas
16
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