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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
Hi-C
Assay category
9
3D chromatin structure
Date released
3
October, 2022
2
March, 2020
2
November, 2019
1
March, 2019
1
October, 2019
Available data
781
bam
703
bigWig
490
fastq
439
tsv
282
bed narrowPeak
140
bigBed narrowPeak
80
zippedFastqFolder
50
bed bed3+
43
bed broadPeak
29
bigBed broadPeak
23
tagAlign
12
bed bedMethyl
12
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
txt
3
cool
3
hdf5
1
bedpe
1
tar
Organism
9
Homo sapiens
Biosample type
5
primary cell
3
tissue
1
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
6
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
4
audit script error
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
9 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
pancreas
1
cell line
EndoC_BH1
1
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