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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
79
ChIP-seq
3
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
79
DNA binding
5
DNA accessibility
Target of assay
52
histone
52
histone modification
27
narrow histone mark
25
broad histone mark
20
control
7
transcription factor
2
RNA binding protein
Date released
173
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
55
February, 2023
55
November, 2019
52
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
153
bam
153
fastq
145
bigWig
89
tsv
35
bed narrowPeak
19
bed bed3+
9
tagAlign
7
bigBed narrowPeak
6
bed broadPeak
Organism
173
Homo sapiens
Biosample type
136
tissue
37
primary cell
Organ
173
pancreas
119
connective tissue
57
adipose tissue
53
liver
26
musculature of body
25
epithelium
Project
173
AMP
Genome assembly (visualization)
145
hg19
138
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
173 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
42
1
1
pancreas
3
primary cell
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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