Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
128
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
128
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
121
May, 2021
46
August, 2017
35
August, 2021
30
February, 2018
26
February, 2021
22
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
235
bam
204
bigWig
131
tsv
93
fastq
77
bed narrowPeak
28
tagAlign
13
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
324
Homo sapiens
Biosample type
2425
tissue
973
primary cell
622
cell line
324
in vitro differentiated cells
8
stem cell
Organ
75
connective tissue
19
embryo
16
epithelium
10
liver
2
pancreas
1
adipose tissue
1
heart
Project
324
AMP
Genome assembly (visualization)
242
hg19
210
GRCh38
4
hg18
Lab
280
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
324 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
45
8
1
1
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
See all biosamples
Download