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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
344
ChIP-seq
Assay category
344
DNA binding
Target of assay
719
histone modification
718
histone
474
transcription factor
373
narrow histone mark
344
broad histone mark
308
control
93
RNA binding protein
88
recombinant protein
22
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
90
August, 2017
56
May, 2019
44
November, 2017
43
October, 2019
37
April, 2019
19
October, 2018
10
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
7
February, 2018
6
November, 2019
4
January, 2019
Available data
274
bed narrowPeak
274
bigWig
263
bam
213
bigBed narrowPeak
90
tagAlign
70
fastq
22
bed broadPeak
6
bed bed3+
2
bigBed broadPeak
Organism
340
Homo sapiens
Biosample type
280
tissue
primary cell
51
in vitro differentiated cells
13
cell line
Organ
70
brain
48
pancreas
40
connective tissue
37
heart
36
blood vessel
36
vasculature
35
liver
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
4
spleen
3
embryo
Project
344
AMP
Genome assembly (visualization)
262
GRCh38
238
hg19
Lab
333
AMP-T2D consortium
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
344 results
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Clear Filters
ChIP-seq
tissue
liver
22
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
islet of Langerhans
14
+ See 25 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
3
+ See 3 more…
cell line
EndoC_BH1
6
Panc1
4
HepG2
3
See all biosamples
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