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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
307
ChIP-seq
Assay category
307
DNA binding
Target of assay
659
histone modification
658
histone
463
transcription factor
350
narrow histone mark
307
broad histone mark
290
control
88
RNA binding protein
88
recombinant protein
22
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
90
August, 2017
49
May, 2019
44
November, 2017
40
October, 2019
19
October, 2018
10
April, 2019
10
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
7
February, 2018
6
November, 2019
4
January, 2019
Available data
237
bed narrowPeak
237
bigWig
226
bam
179
bigBed narrowPeak
90
tagAlign
70
fastq
22
bed broadPeak
6
bed bed3+
2
bigBed broadPeak
Organism
303
Homo sapiens
Biosample type
243
tissue
primary cell
51
in vitro differentiated cells
13
cell line
Organ
70
brain
heart
48
pancreas
40
connective tissue
36
blood vessel
36
vasculature
35
liver
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
4
spleen
3
embryo
Project
307
AMP
Genome assembly (visualization)
225
GRCh38
201
hg19
Lab
296
AMP-T2D consortium
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
organ_slims!
heart
BIOSAMPLE
ASSAY
307 results
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Clear Filters
ChIP-seq
tissue
liver
22
subcutaneous abdominal adipose tissue
20
tibial nerve
16
islet of Langerhans
14
tibial artery
14
+ See 20 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
3
+ See 3 more…
cell line
EndoC_BH1
6
Panc1
4
HepG2
3
See all biosamples
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