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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
5
MeRIP-seq
Assay category
71
DNA binding
Target of assay
234
transcription factor
77
histone
77
histone modification
76
control
65
recombinant protein
44
broad histone mark
33
narrow histone mark
32
RNA binding protein
9
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
71
November, 2017
50
August, 2017
39
October, 2019
29
October, 2018
23
May, 2019
23
May, 2020
21
December, 2017
14
April, 2019
12
August, 2021
9
May, 2021
8
February, 2018
8
June, 2019
6
November, 2018
6
September, 2017
5
November, 2020
4
December, 2018
4
January, 2019
3
February, 2021
3
July, 2019
3
October, 2017
2
November, 2019
Available data
71
bam
59
fastq
16
bigWig
11
tagAlign
Organism
76
Homo sapiens
Biosample type
59
cell line
14
tissue
3
primary cell
Organ
56
liver
15
brain
5
epithelium
5
pancreas
2
vasculature
1
blood vessel
Project
76
AMP
Genome assembly (visualization)
16
hg19
Lab
71
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
56
EndoC_BH1
3
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
islet of Langerhans
2
middle frontal area 46
2
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primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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